# Stuart Levine Source: https://hello.cv/stuartlevine ## Work ### MIT BioMicro Center Director | Massachusetts Institute of Technology ### Postdoctoral associate / Research Scientist | Whitehead Institute for Biomedical Research ## Education ### Harvard University | PhD ### Massachusetts Institute of Technology | SB ## Publications ### Enhancer Reprogramming in Melanoma Immune Checkpoint Therapy Resistance preprint ### A single-cell liver atlas of Plasmodium vivax infection. Cell host & microbe journal-article ### NExtSEEK: Extending SEEK for Active Management of Interoperable Metadata. Journal of biomolecular techniques : JBT journal-article ### Developmental Deconvolution for Classification of Cancer Origin. Cancer discovery journal-article ### Myeloid cell subsets that express latency-associated peptide promote cancer growth by modulating T cells. iScience journal-article ### Developmental Deconvolution for Classification of Cancer Origin preprint ### Gene signatures and host-parasite interactions revealed by dual single-cell profiling of Plasmodium vivax liver infection preprint ### Quantitative mapping of the cellular small RNA landscape with AQRNA-seq. Nature biotechnology journal-article ### Human physiomimetic model integrating microphysiological systems of the gut, liver, and brain for studies of neurodegenerative diseases. Science advances journal-article ### Benchmarking cDNA sequencing on PromethION Journal of biomolecular techniques : JBT journal-article ### Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities. Journal of biomolecular techniques : JBT journal-article ### Multisite Evaluation of Next-Generation Methods for Small RNA Quantification. Journal of biomolecular techniques : JBT journal-article ### SPRI Beads-based Size Selection in the Range of 2-10kb. Journal of biomolecular techniques : JBT journal-article ### High-throughput Minitaturized RNA-Seq Library Preparation. Journal of biomolecular techniques : JBT journal-article ### Cross-Site Evaluation of Commercial Sanger Sequencing Chemistries. Journal of biomolecular techniques : JBT journal-article ### A set of miniaturized high-throughput library protocols for RNA sequencing Journal of biomolecular techniques : JBT journal-article ### HONEY I SHRUNK THE KITS: Practical Adventures in Reducing Assay Volumes Journal of biomolecular techniques : JBT journal-article ### Ketone Body Signaling Mediates Intestinal Stem Cell Homeostasis and Adaptation to Diet. Cell journal-article ### Stabilization of the Max Homodimer with a Small Molecule Attenuates Myc-Driven Transcription. Cell chemical biology journal-article ### Encapsulated miR-200c and Nkx2.1 in a nuclear/mitochondria transcriptional regulatory network of non-metastatic and metastatic lung cancer cells. BMC cancer journal-article ### Global transcriptional regulation of innate immunity by ATF-7 in C. elegans. PLoS genetics journal-article ### Cross Site Evaluation of Sanger Sequencing Dye Chemistries Journal of biomolecular techniques : JBT journal-article ### GBIRG Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities Journal of biomolecular techniques : JBT journal-article ### Miniaturization of Illumina Library Preparation for High Throughput, Plate-Based Next Generation Sequencing Studies Journal of biomolecular techniques : JBT journal-article ### Sequencing-based quantitative mapping of the cellular small RNA landscape preprint ### Single-cell transcriptomic profiling of the aging mouse brain. Nature neuroscience journal-article ### H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration. Development (Cambridge, England) journal-article ### HRI coordinates translation necessary for protein homeostasis and mitochondrial function in erythropoiesis. eLife journal-article ### Global transcriptional regulation of innate immunity in C. elegans other ### Iron and Heme Coordinate Erythropoiesis through HRI-Mediated Regulation of Protein Translation and Gene Expression other ### Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures preprint ### In Vitro Culture, Drug Sensitivity, and Transcriptome of Plasmodium Vivax Hypnozoites. Cell host & microbe journal-article ### Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction. BMC genomics journal-article ### Cross-Site Comparison of Ribosomal Depletion Kits for Illumina RNAseq Library Construction other ### Host proteostasis modulates influenza evolution. eLife journal-article ### The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription. The EMBO journal journal-article ### Mutational spectra of aflatoxin B1 in vivo establish biomarkers of exposure for human hepatocellular carcinoma. Proceedings of the National Academy of Sciences of the United States of America journal-article ### Monitoring Error Rates In Illumina Sequencing. Journal of biomolecular techniques : JBT journal-article ### RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes. Genomics journal-article ### Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo. Nucleic acids research journal-article ### Transportable, Chemical Genetic Methodology for the Small Molecule-Mediated Inhibition of Heat Shock Factor 1. ACS chemical biology journal-article ### Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences. Nature communications journal-article ### TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release. Nature structural & molecular biology journal-article ### Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis. Environmental Health Perspectives journal-article ### Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number. Nucleic acids research journal-article ### Polycomb Repressive Complex 2 regulates lineage fidelity during embryonic stem cell differentiation. PloS one journal-article ### H2A.Z acidic patch couples chromatin dynamics to regulation of gene expression programs during ESC differentiation. PLoS genetics journal-article ### Which RNA-Seq Processing Algorithm Should I Pick? A Comparison of RNA-Seq Pipelines Based on Experimental Design, Sample Properties and Sequencing Technology. Journal of biomolecular techniques : JBT journal-article ### Gut microbiome perturbations induced by bacterial infection affect arsenic biotransformation. Chemical research in toxicology journal-article ### Lane-by-lane sequencing using Illumina's Genome Analyzer II. BioTechniques journal-article ### Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity. Proceedings of the National Academy of Sciences of the United States of America journal-article ### Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell journal-article ### Comparison of SYBR Enzymes and Standards in Illumina Library Quantification. Journal of biomolecular techniques : JBT journal-article ### miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nature neuroscience journal-article ### Mediator and cohesin connect gene expression and chromatin architecture. Nature journal-article ### Ronin/Hcf-1 binds to a hyperconserved enhancer element and regulates genes involved in the growth of embryonic stem cells. Genes & development journal-article ### Effects of age on meiosis in budding yeast. Developmental cell journal-article ### H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment. Cell journal-article ### Divergent transcription from active promoters. Science (New York, N.Y.) journal-article ### Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia. Genes & development journal-article ### Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell journal-article ### A chromatin landmark and transcription initiation at most promoters in human cells. Cell journal-article ### Foxp3 occupancy and regulation of key target genes during T-cell stimulation. Nature journal-article ### Control of developmental regulators by Polycomb in human embryonic stem cells. Cell journal-article ### Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature journal-article ### Genome-wide map of nucleosome acetylation and methylation in yeast. Cell journal-article ### The core centromere and Sgo1 establish a 50-kb cohesin-protected domain around centromeres during meiosis I. Genes & development journal-article ### Core transcriptional regulatory circuitry in human embryonic stem cells. Cell journal-article ### Division of labor in polycomb group repression. Trends in biochemical sciences journal-article ### Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus. Molecular cell journal-article ### The core of the polycomb repressive complex is compositionally and functionally conserved in flies and humans. Molecular and cellular biology journal-article ## Source Read this profile on Hello.cv: https://hello.cv/stuartlevine Create your free profile at https://hello.cv